PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G073044_P01
Common NameLOB16, LOC100282086, ZEAMMB73_237755, Zm.93895
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family LBD
Protein Properties Length: 313aa    MW: 33373.5 Da    PI: 5.2468
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G073044_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26087.81.5e-274107198
             DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqq 86 
                        +C++C+vlr++C + C+++p++     p++q++++ +++k++G++ +l+ll+a+p++  r+++++sl+yeA+ r+ +PvyG+vg++++ q++
  GRMZM2G073044_P01   4 SCNGCRVLRKGCGDACTIRPCLqwieaPEAQANATVFLAKFYGRAGLLNLLAAAPDDGvRPAVFRSLLYEACGRIVNPVYGSVGLLWSRQWH 95 
                        6*****************************************************99998********************************* PP

             DUF260  87 leqlkaelallk 98 
                         +  ++e++l++
  GRMZM2G073044_P01  96 RCADAVEAVLRG 107
                        **9999988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.4253110IPR004883Lateral organ boundaries, LOB
PfamPF031956.5E-224102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCGDACT IRPCLQWIEA PEAQANATVF LAKFYGRAGL LNLLAAAPDD  60
GVRPAVFRSL LYEACGRIVN PVYGSVGLLW SRQWHRCADA VEAVLRGDPV VQVDAGSDAA  120
AAPPLLAGAR PPPPAAFDIR HVPRDPDATA ADLLRAGRKR FKRAGSSSNA SKAKPLPLEL  180
EGKAGNNERA SPSPPPTQQR EAEELQPVPM VVEPEHGEES AGSHDHHLQL QGWSEEDTDV  240
EAASHVSQAE AEPPASSQSQ VLVADQEEEE VGLELTLGFE PVVRQQPRSS RCDKSGLSAA  300
SSLIGLRLQL PAA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.938950.0silk
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G073044
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G073044_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9631440.0EU963144.1 Zea mays clone 258271 seed specific protein Bn15D17A mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001148471.20.0seed specific protein Bn15D17A
TrEMBLB6TDS90.0B6TDS9_MAIZE; LOB transcription factor
STRINGGRMZM2G073044_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.17e-58LOB domain-containing protein 41
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]